GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Esalsugineum_Thhalv10026702m.g Thhalv10026702m.g	scaffold_1	2298348	2299500	Phytozome	v1.0	Eutrema_salsugineum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Esalsugineum_Thhalv10026699m Thhalv10026699m PAC:20193230	High	No	614		Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -22.476 AMFE: -0.639 GC content %: 35.179
Esalsugineum_Thhalv10026702m Thhalv10026702m PAC:20193229	High	No	669		Get ORF Coding potential... Type: noncoding Potential: -0.794 Folding energies... MFEI: -22.227 AMFE: -0.638 GC content %: 34.828

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).