GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Fvesca_gene00290-v1.0-hybrid gene00290-v1.0-hybrid	LG6	3663496	3663843	Phytozome	v1.1	Fragaria_vesca	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Fvesca_mrna00290.1-v1.0-hybrid mrna00290.1-v1.0-hybrid PAC:27255418	Low	No	348		Get ORF Coding potential... Type: coding Potential: 0.540 Folding energies... MFEI: -21.379 AMFE: -0.510 GC content %: 41.954

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).