GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Fvesca_gene00486-v1.0-hybrid gene00486-v1.0-hybrid	LG6	19714672	19714998	Phytozome	v1.1	Fragaria_vesca	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Fvesca_mrna00486.1-v1.0-hybrid mrna00486.1-v1.0-hybrid PAC:27255119	Low	No	219		Get ORF Coding potential... Type: noncoding Potential: -0.580 Folding energies... MFEI: -23.425 AMFE: -0.513 GC content %: 45.662

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Fvesca_mrna00486.1-v1.0-hybrid	RepBase (RepeatMasker)	2014-01-31	EnSpm-2_FV

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).