Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Fvesca_gene13997-v1.0-hybrid gene13997-v1.0-hybrid |
LG3 | 27533511 | 27533928 | Phytozome | v1.1 | Fragaria_vesca | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Fvesca_mrna13997.1-v1.0-hybrid mrna13997.1-v1.0-hybrid PAC:27271847 |
Low | Yes | 312 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -79.872 AMFE: -1.377 GC content %: 58.013 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Fvesca_mrna13997.1-v1.0-hybrid | Rfam | 11.0 | mir-582 | 1.8e-6 |
Fvesca_mrna13997.1-v1.0-hybrid | RepBase (RepeatMasker) | 2014-01-31 | DNA-2_FV |