GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Fvesca_gene22128-v1.0-hybrid gene22128-v1.0-hybrid	LG5	27218619	27218924	Phytozome	v1.1	Fragaria_vesca	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Fvesca_mrna22128.1-v1.0-hybrid mrna22128.1-v1.0-hybrid PAC:27269888	High	No	306		Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -24.967 AMFE: -0.542 GC content %: 46.078

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).