GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Fvesca_gene29246-v1.0-hybrid gene29246-v1.0-hybrid	LG5	18319831	18322655	Phytozome	v1.1	Fragaria_vesca	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Fvesca_mrna29246.1-v1.0-hybrid mrna29246.1-v1.0-hybrid PAC:27270163	Low	No	282		Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -25.674 AMFE: -0.517 GC content %: 49.645

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Fvesca_mrna29246.1-v1.0-hybrid	RepBase (RepeatMasker)	2014-01-31	L1-20_FV

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).