GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.01G109600 Glyma.01G109600	Chr01	37330257	37332544	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.01G109600.1 Glyma.01G109600.1 PAC:30543106	High	No	652		Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -24.693 AMFE: -0.639 GC content %: 38.650
Gmax_Glyma.01G109600.2 Glyma.01G109600.2 PAC:30543107	High	No	662		Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -25.831 AMFE: -0.665 GC content %: 38.822

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).