GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.01G221800 Glyma.01G221800	Chr01	55085734	55087338	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.01G221800.1 Glyma.01G221800.1 PAC:30543224	High	No	540		Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -25.259 AMFE: -0.578 GC content %: 43.704
Gmax_Glyma.01G221800.2 Glyma.01G221800.2 PAC:30543223	High	No	416		Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -28.486 AMFE: -0.624 GC content %: 45.673
Gmax_Glyma.01G221800.3 Glyma.01G221800.3 PAC:30543222	High	No	387		Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -26.796 AMFE: -0.596 GC content %: 44.961

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).