GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.02G084700 Glyma.02G084700	Chr02	7371577	7374339	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.02G084700.1 Glyma.02G084700.1 PAC:30507439	High	No	839		Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -22.652 AMFE: -0.617 GC content %: 36.710
Gmax_Glyma.02G084700.2 Glyma.02G084700.2 PAC:30507440	High	No	702		Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -22.903 AMFE: -0.600 GC content %: 38.177

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).