GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.02G095700 Glyma.02G095700	Chr02	8617001	8621683	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.02G095700.1 Glyma.02G095700.1 PAC:30508251	High	No	684		Get ORF Coding potential... Type: noncoding Potential: -0.405 Folding energies... MFEI: -23.509 AMFE: -0.611 GC content %: 38.450
Gmax_Glyma.02G095700.2 Glyma.02G095700.2 PAC:30508252	High	No	1157		Get ORF Coding potential... Type: noncoding Potential: -0.416 Folding energies... MFEI: -25.411 AMFE: -0.648 GC content %: 39.239

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).