Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Gmax_Glyma.02G109500 Glyma.02G109500 |
Chr02 | 10502970 | 10505543 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Gmax_Glyma.02G109500.1 Glyma.02G109500.1 PAC:30510555 |
Low | Yes | 1806 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -25.337 AMFE: -0.730 GC content %: 34.718 | |
Gmax_Glyma.02G109500.2 Glyma.02G109500.2 PAC:30510552 |
Low | Yes | 1726 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -25.660 AMFE: -0.732 GC content %: 35.052 | |
Gmax_Glyma.02G109500.3 Glyma.02G109500.3 PAC:30510553 |
Low | Yes | 1260 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -27.149 AMFE: -0.747 GC content %: 36.349 | |
Gmax_Glyma.02G109500.4 Glyma.02G109500.4 PAC:30510554 |
Low | Yes | 1340 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -26.588 AMFE: -0.742 GC content %: 35.821 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmax_Glyma.02G109500.2 | Rfam | 11.0 | MIR169_2 | 1.4e-16 |
Gmax_Glyma.02G109500.3 | Rfam | 11.0 | MIR169_2 | 1.1e-16 |
Gmax_Glyma.02G109500.4 | Rfam | 11.0 | MIR169_2 | 1.1e-16 |
Gmax_Glyma.02G109500.1 | Rfam | 11.0 | MIR169_2 | 1.5e-16 |