GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.02G204800 Glyma.02G204800	Chr02	39001387	39005067	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.02G204800.1 Glyma.02G204800.1 PAC:30506502	High	No	795		Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -20.755 AMFE: -0.565 GC content %: 36.730
Gmax_Glyma.02G204800.2 Glyma.02G204800.2 PAC:30506503	High	No	746		Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -20.442 AMFE: -0.567 GC content %: 36.059

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).