Gene
Gmax Glyma.03G184400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Gmax_Glyma.03G184400 Glyma.03G184400 |
Chr03 | 39614391 | 39617673 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Gmax_Glyma.03G184400.1 Glyma.03G184400.1 PAC:30518404 |
High | No | 1227 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -23.113 AMFE: -0.637 GC content %: 36.267 | |
| Gmax_Glyma.03G184400.2 Glyma.03G184400.2 PAC:30518408 |
High | No | 913 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -23.976 AMFE: -0.665 GC content %: 36.035 | |
| Gmax_Glyma.03G184400.3 Glyma.03G184400.3 PAC:30518403 |
High | No | 967 | Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -22.978 AMFE: -0.637 GC content %: 36.091 | |
| Gmax_Glyma.03G184400.4 Glyma.03G184400.4 PAC:30518405 |
High | No | 918 | Get ORF Coding potential... Type: noncoding Potential: -0.809 Folding energies... MFEI: -23.627 AMFE: -0.653 GC content %: 36.166 | |
| Gmax_Glyma.03G184400.5 Glyma.03G184400.5 PAC:30518406 |
High | No | 962 | Get ORF Coding potential... Type: noncoding Potential: -0.821 Folding energies... MFEI: -23.108 AMFE: -0.642 GC content %: 35.967 | |
| Gmax_Glyma.03G184400.6 Glyma.03G184400.6 PAC:30518407 |
High | No | 1032 | Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -24.690 AMFE: -0.691 GC content %: 35.756 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
