GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.04G014200 Glyma.04G014200	Chr04	1093371	1097356	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.04G014200.1 Glyma.04G014200.1 PAC:30489966	High	No	3252		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -24.790 AMFE: -0.668 GC content %: 37.116
Gmax_Glyma.04G014200.2 Glyma.04G014200.2 PAC:30489967	High	No	928		Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -26.918 AMFE: -0.652 GC content %: 41.272
Gmax_Glyma.04G014200.3 Glyma.04G014200.3 PAC:30489968	High	No	892		Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -25.908 AMFE: -0.618 GC content %: 41.928
Gmax_Glyma.04G014200.4 Glyma.04G014200.4 PAC:30489969	High	No	585		Get ORF Coding potential... Type: noncoding Potential: -0.575 Folding energies... MFEI: -27.111 AMFE: -0.615 GC content %: 44.103
Gmax_Glyma.04G014200.5 Glyma.04G014200.5 PAC:30489970	High	No	1582		Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -26.384 AMFE: -0.671 GC content %: 39.317

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).