GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.04G026600 Glyma.04G026600	Chr04	2159453	2161481	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.04G026600.1 Glyma.04G026600.1 PAC:30489316	High	No	1790		Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -26.078 AMFE: -0.675 GC content %: 38.659
Gmax_Glyma.04G026600.2 Glyma.04G026600.2 PAC:30489315	High	No	1658		Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -25.127 AMFE: -0.661 GC content %: 37.998
Gmax_Glyma.04G026600.3 Glyma.04G026600.3 PAC:30489317	High	No	1760		Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -24.920 AMFE: -0.665 GC content %: 37.500

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).