GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.04G121200 Glyma.04G121200	Chr04	15177943	15179868	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.04G121200.1 Glyma.04G121200.1 PAC:30490153	High	No	682		Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -21.774 AMFE: -0.582 GC content %: 37.390
Gmax_Glyma.04G121200.2 Glyma.04G121200.2 PAC:30490155	High	No	610		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -21.262 AMFE: -0.587 GC content %: 36.230
Gmax_Glyma.04G121200.3 Glyma.04G121200.3 PAC:30490154	High	No	606		Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -21.106 AMFE: -0.549 GC content %: 38.449

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).