GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.04G254400 Glyma.04G254400	Chr04	52105428	52106692	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.04G254400.1 Glyma.04G254400.1 PAC:30489043	High	No	1127		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -29.973 AMFE: -0.692 GC content %: 43.301
Gmax_Glyma.04G254400.2 Glyma.04G254400.2 PAC:30489044	High	No	611		Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -28.903 AMFE: -0.631 GC content %: 45.827

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).