Gene
Gmax Glyma.05G060100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Gmax_Glyma.05G060100 Glyma.05G060100 |
Chr05 | 5600838 | 5603831 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Gmax_Glyma.05G060100.1 Glyma.05G060100.1 PAC:30523824 |
High | No | 685 | Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -24.686 AMFE: -0.551 GC content %: 44.818 | |
| Gmax_Glyma.05G060100.2 Glyma.05G060100.2 PAC:30523827 |
High | No | 559 | Get ORF Coding potential... Type: noncoding Potential: -0.613 Folding energies... MFEI: -25.456 AMFE: -0.556 GC content %: 45.796 | |
| Gmax_Glyma.05G060100.3 Glyma.05G060100.3 PAC:30523823 |
High | No | 621 | Get ORF Coding potential... Type: noncoding Potential: -0.727 Folding energies... MFEI: -24.380 AMFE: -0.537 GC content %: 45.411 | |
| Gmax_Glyma.05G060100.4 Glyma.05G060100.4 PAC:30523829 |
High | No | 617 | Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -25.462 AMFE: -0.563 GC content %: 45.219 | |
| Gmax_Glyma.05G060100.5 Glyma.05G060100.5 PAC:30523828 |
High | No | 533 | Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -26.492 AMFE: -0.565 GC content %: 46.904 | |
| Gmax_Glyma.05G060100.6 Glyma.05G060100.6 PAC:30523830 |
High | No | 406 | Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -27.365 AMFE: -0.539 GC content %: 50.739 | |
| Gmax_Glyma.05G060100.7 Glyma.05G060100.7 PAC:30523825 |
High | No | 407 | Get ORF Coding potential... Type: noncoding Potential: -0.704 Folding energies... MFEI: -25.430 AMFE: -0.502 GC content %: 50.614 | |
| Gmax_Glyma.05G060100.8 Glyma.05G060100.8 PAC:30523826 |
High | No | 468 | Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -26.026 AMFE: -0.525 GC content %: 49.573 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
