GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.06G086300 Glyma.06G086300	Chr06	6657841	6661303	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.06G086300.1 Glyma.06G086300.1 PAC:30553796	High	No	771		Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -26.278 AMFE: -0.596 GC content %: 44.099
Gmax_Glyma.06G086300.2 Glyma.06G086300.2 PAC:30553798	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -26.539 AMFE: -0.602 GC content %: 44.113
Gmax_Glyma.06G086300.3 Glyma.06G086300.3 PAC:30553797	High	No	586		Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -25.341 AMFE: -0.556 GC content %: 45.563

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).