GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.06G194700 Glyma.06G194700	Chr06	17347772	17348895	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.06G194700.1 Glyma.06G194700.1 PAC:30551698	High	No	990		Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -23.939 AMFE: -0.666 GC content %: 35.960
Gmax_Glyma.06G194700.2 Glyma.06G194700.2 PAC:30551699	High	No	962		Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -24.210 AMFE: -0.667 GC content %: 36.279

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).