Gene
Gmax Glyma.07G088700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Gmax_Glyma.07G088700 Glyma.07G088700 |
Chr07 | 8270116 | 8275026 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Gmax_Glyma.07G088700.1 Glyma.07G088700.1 PAC:30493211 |
High | No | 907 | Get ORF Coding potential... Type: noncoding Potential: -0.580 Folding energies... MFEI: -25.799 AMFE: -0.655 GC content %: 39.361 | |
| Gmax_Glyma.07G088700.2 Glyma.07G088700.2 PAC:30493217 |
High | No | 651 | Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -25.438 AMFE: -0.602 GC content %: 42.243 | |
| Gmax_Glyma.07G088700.3 Glyma.07G088700.3 PAC:30493213 |
High | No | 757 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -26.407 AMFE: -0.666 GC content %: 39.630 | |
| Gmax_Glyma.07G088700.4 Glyma.07G088700.4 PAC:30493214 |
High | No | 847 | Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -26.128 AMFE: -0.667 GC content %: 39.197 | |
| Gmax_Glyma.07G088700.5 Glyma.07G088700.5 PAC:30493215 |
High | No | 835 | Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -26.060 AMFE: -0.665 GC content %: 39.162 | |
| Gmax_Glyma.07G088700.6 Glyma.07G088700.6 PAC:30493212 |
High | No | 754 | Get ORF Coding potential... Type: noncoding Potential: -0.556 Folding energies... MFEI: -25.279 AMFE: -0.693 GC content %: 36.472 | |
| Gmax_Glyma.07G088700.7 Glyma.07G088700.7 PAC:30493216 |
High | No | 725 | Get ORF Coding potential... Type: noncoding Potential: -0.691 Folding energies... MFEI: -21.684 AMFE: -0.634 GC content %: 34.207 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
