Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Gmax_Glyma.07G136300 Glyma.07G136300 |
Chr07 | 16135664 | 16141347 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Gmax_Glyma.07G136300.1 Glyma.07G136300.1 PAC:30495060 |
Low | No | 1088 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -24.200 AMFE: -0.624 GC content %: 38.787 | |
Gmax_Glyma.07G136300.2 Glyma.07G136300.2 PAC:30495059 |
Low | No | 1018 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -24.361 AMFE: -0.626 GC content %: 38.900 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmax_Glyma.07G136300.1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-30_GM-LTR | |
Gmax_Glyma.07G136300.2 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-30_GM-LTR |