GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.08G315000 Glyma.08G315000	Chr08	43495795	43497502	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.08G315000.1 Glyma.08G315000.1 PAC:30537364	High	No	1049		Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -25.148 AMFE: -0.692 GC content %: 36.320
Gmax_Glyma.08G315000.2 Glyma.08G315000.2 PAC:30537365	High	No	903		Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -24.241 AMFE: -0.665 GC content %: 36.434

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).