Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Gmax_Glyma.09G284100 Glyma.09G284100 |
Chr09 | 49946734 | 49949323 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Gmax_Glyma.09G284100.1 Glyma.09G284100.1 PAC:30482749 |
Low | No | 336 | Get ORF Coding potential... Type: noncoding Potential: -0.386 Folding energies... MFEI: -24.464 AMFE: -0.627 GC content %: 38.988 | |
Gmax_Glyma.09G284100.2 Glyma.09G284100.2 PAC:30482750 |
High | No | 517 | Get ORF Coding potential... Type: noncoding Potential: -0.671 Folding energies... MFEI: -22.863 AMFE: -0.642 GC content %: 35.590 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmax_Glyma.09G284100.1 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-1_PD |