GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.11G019600 Glyma.11G019600	Chr11	1382803	1384449	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.11G019600.1 Glyma.11G019600.1 PAC:30530540	High	No	528		Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -21.875 AMFE: -0.605 GC content %: 36.174
Gmax_Glyma.11G019600.2 Glyma.11G019600.2 PAC:30530541	High	No	614		Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -20.586 AMFE: -0.569 GC content %: 36.156

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).