GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.11G061100 Glyma.11G061100	Chr11	4581120	4582200	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.11G061100.1 Glyma.11G061100.1 PAC:30528962	High	No	342		Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -25.643 AMFE: -0.548 GC content %: 46.784
Gmax_Glyma.11G061100.2 Glyma.11G061100.2 PAC:30528963	High	No	527		Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -27.571 AMFE: -0.632 GC content %: 43.643

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).