GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.11G196500 Glyma.11G196500	Chr11	27085323	27086654	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.11G196500.1 Glyma.11G196500.1 PAC:30531636	High	No	863		Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -23.905 AMFE: -0.665 GC content %: 35.921
Gmax_Glyma.11G196500.2 Glyma.11G196500.2 PAC:30531635	High	No	836		Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -23.732 AMFE: -0.659 GC content %: 36.005
Gmax_Glyma.11G196500.3 Glyma.11G196500.3 PAC:30531637	High	No	850		Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -23.976 AMFE: -0.666 GC content %: 36.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).