Gene
Gmax Glyma.11G208400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Gmax_Glyma.11G208400 Glyma.11G208400 |
Chr11 | 29816697 | 29818634 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Gmax_Glyma.11G208400.1 Glyma.11G208400.1 PAC:30530349 |
Low | No | 999 | Get ORF Coding potential... Type: noncoding Potential: -0.714 Folding energies... MFEI: -26.507 AMFE: -0.697 GC content %: 38.038 | |
| Gmax_Glyma.11G208400.2 Glyma.11G208400.2 PAC:30530351 |
Low | No | 953 | Get ORF Coding potential... Type: noncoding Potential: -0.704 Folding energies... MFEI: -26.201 AMFE: -0.668 GC content %: 39.244 | |
| Gmax_Glyma.11G208400.3 Glyma.11G208400.3 PAC:30530350 |
Low | No | 767 | Get ORF Coding potential... Type: noncoding Potential: -0.654 Folding energies... MFEI: -25.841 AMFE: -0.663 GC content %: 38.983 | |
| Gmax_Glyma.11G208400.4 Glyma.11G208400.4 PAC:30530348 |
Low | No | 962 | Get ORF Coding potential... Type: noncoding Potential: -0.706 Folding energies... MFEI: -23.784 AMFE: -0.641 GC content %: 37.110 | |
| Gmax_Glyma.11G208400.5 Glyma.11G208400.5 PAC:30530352 |
Low | No | 975 | Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -23.928 AMFE: -0.632 GC content %: 37.846 | |
| Gmax_Glyma.11G208400.6 Glyma.11G208400.6 PAC:30530355 |
Low | No | 722 | Get ORF Coding potential... Type: noncoding Potential: -0.639 Folding energies... MFEI: -24.723 AMFE: -0.654 GC content %: 37.812 | |
| Gmax_Glyma.11G208400.7 Glyma.11G208400.7 PAC:30530353 |
Low | No | 794 | Get ORF Coding potential... Type: noncoding Potential: -0.663 Folding energies... MFEI: -24.169 AMFE: -0.638 GC content %: 37.909 | |
| Gmax_Glyma.11G208400.8 Glyma.11G208400.8 PAC:30530354 |
Low | No | 893 | Get ORF Coding potential... Type: noncoding Potential: -0.690 Folding energies... MFEI: -24.099 AMFE: -0.633 GC content %: 38.074 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gmax_Glyma.11G208400.5 | SwissProt | 2015-06-01 | Q6DHJ6 | 7.0e-7 |
| Gmax_Glyma.11G208400.6 | SwissProt | 2015-06-01 | Q6DHJ6 | 3.0e-7 |
| Gmax_Glyma.11G208400.1 | SwissProt | 2015-06-01 | Q6DHJ6 | 7.0e-7 |
| Gmax_Glyma.11G208400.7 | SwissProt | 2015-06-01 | Q6DHJ6 | 4.0e-7 |
| Gmax_Glyma.11G208400.2 | SwissProt | 2015-06-01 | Q6DHJ6 | 7.0e-7 |
| Gmax_Glyma.11G208400.8 | SwissProt | 2015-06-01 | Q6DHJ6 | 6.0e-7 |
| Gmax_Glyma.11G208400.3 | SwissProt | 2015-06-01 | Q6DHJ6 | 4.0e-7 |
| Gmax_Glyma.11G208400.4 | SwissProt | 2015-06-01 | Q6DHJ6 | 7.0e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
