GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.12G077700 Glyma.12G077700	Chr12	6036093	6037146	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.12G077700.1 Glyma.12G077700.1 PAC:30548735	High	No	775		Get ORF Coding potential... Type: noncoding Potential: -0.777 Folding energies... MFEI: -23.935 AMFE: -0.642 GC content %: 37.290
Gmax_Glyma.12G077700.2 Glyma.12G077700.2 PAC:30548736	High	No	740		Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -24.216 AMFE: -0.671 GC content %: 36.081

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).