GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.13G195500 Glyma.13G195500	Chr13	30899643	30905295	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.13G195500.1 Glyma.13G195500.1 PAC:30503213	High	No	2081		Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -22.460 AMFE: -0.669 GC content %: 33.590
Gmax_Glyma.13G195500.2 Glyma.13G195500.2 PAC:30503212	High	No	1536		Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -22.480 AMFE: -0.650 GC content %: 34.570

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).