Gene
Gmax Glyma.14G155400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Gmax_Glyma.14G155400 Glyma.14G155400 |
Chr14 | 33785317 | 33796812 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Gmax_Glyma.14G155400.1 Glyma.14G155400.1 PAC:30532457 |
Low | No | 995 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -24.573 AMFE: -0.595 GC content %: 41.307 | |
| Gmax_Glyma.14G155400.2 Glyma.14G155400.2 PAC:30532456 |
Low | No | 755 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -23.444 AMFE: -0.577 GC content %: 40.662 | |
| Gmax_Glyma.14G155400.3 Glyma.14G155400.3 PAC:30532455 |
High | No | 582 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -23.247 AMFE: -0.555 GC content %: 41.924 | |
| Gmax_Glyma.14G155400.4 Glyma.14G155400.4 PAC:30532459 |
Low | No | 728 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -24.698 AMFE: -0.616 GC content %: 40.110 | |
| Gmax_Glyma.14G155400.5 Glyma.14G155400.5 PAC:30532458 |
Low | No | 741 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -25.157 AMFE: -0.626 GC content %: 40.216 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gmax_Glyma.14G155400.2 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-1_GM | |
| Gmax_Glyma.14G155400.4 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-120_GM-I | |
| Gmax_Glyma.14G155400.5 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-120_GM-I | |
| Gmax_Glyma.14G155400.1 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-1_GM |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
