GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.15G032200 Glyma.15G032200	Chr15	2591937	2593923	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.15G032200.1 Glyma.15G032200.1 PAC:30497153	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -20.211 AMFE: -0.515 GC content %: 39.211
Gmax_Glyma.15G032200.2 Glyma.15G032200.2 PAC:30497154	High	No	727		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -20.839 AMFE: -0.551 GC content %: 37.827

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).