GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.15G069000 Glyma.15G069000	Chr15	5255798	5256704	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.15G069000.1 Glyma.15G069000.1 PAC:30499763	High	No	626		Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -23.898 AMFE: -0.650 GC content %: 36.741
Gmax_Glyma.15G069000.2 Glyma.15G069000.2 PAC:30499764	High	No	799		Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -23.504 AMFE: -0.673 GC content %: 34.919

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).