GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.15G218000 Glyma.15G218000	Chr15	37031598	37033350	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.15G218000.1 Glyma.15G218000.1 PAC:30496423	High	No	745		Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -21.396 AMFE: -0.552 GC content %: 38.792
Gmax_Glyma.15G218000.2 Glyma.15G218000.2 PAC:30496420	High	No	649		Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -22.619 AMFE: -0.565 GC content %: 40.062
Gmax_Glyma.15G218000.3 Glyma.15G218000.3 PAC:30496424	High	No	650		Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -23.400 AMFE: -0.585 GC content %: 40.000
Gmax_Glyma.15G218000.4 Glyma.15G218000.4 PAC:30496421	High	No	616		Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -22.922 AMFE: -0.576 GC content %: 39.773
Gmax_Glyma.15G218000.5 Glyma.15G218000.5 PAC:30496422	High	No	625		Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -22.784 AMFE: -0.572 GC content %: 39.840

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).