GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.15G256000 Glyma.15G256000	Chr15	48531279	48532198	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.15G256000.1 Glyma.15G256000.1 PAC:30495781	High	No	599		Get ORF Coding potential... Type: noncoding Potential: -0.613 Folding energies... MFEI: -22.755 AMFE: -0.611 GC content %: 37.229
Gmax_Glyma.15G256000.2 Glyma.15G256000.2 PAC:30495782	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -0.620 Folding energies... MFEI: -22.081 AMFE: -0.595 GC content %: 37.081

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).