GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.16G004700 Glyma.16G004700	Chr16	263014	266754	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.16G004700.1 Glyma.16G004700.1 PAC:30561900	High	No	1540		Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -23.748 AMFE: -0.675 GC content %: 35.195
Gmax_Glyma.16G004700.2 Glyma.16G004700.2 PAC:30561897	High	No	1187		Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -22.430 AMFE: -0.580 GC content %: 38.669
Gmax_Glyma.16G004700.3 Glyma.16G004700.3 PAC:30561899	High	No	989		Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -22.902 AMFE: -0.582 GC content %: 39.333
Gmax_Glyma.16G004700.4 Glyma.16G004700.4 PAC:30561901	High	No	995		Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -21.879 AMFE: -0.564 GC content %: 38.794
Gmax_Glyma.16G004700.5 Glyma.16G004700.5 PAC:30561898	High	No	987		Get ORF Coding potential... Type: noncoding Potential: -0.855 Folding energies... MFEI: -26.140 AMFE: -0.660 GC content %: 39.615

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).