GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.16G055000 Glyma.16G055000	Chr16	5411241	5413143	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.16G055000.1 Glyma.16G055000.1 PAC:30561945	High	No	791		Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -23.439 AMFE: -0.557 GC content %: 42.099
Gmax_Glyma.16G055000.2 Glyma.16G055000.2 PAC:30561944	High	No	664		Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -21.461 AMFE: -0.511 GC content %: 42.018

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).