GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.16G123400 Glyma.16G123400	Chr16	27245225	27246814	Phytozome	Wm82.a2.v1	Glycine_max	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.16G123400.2 Glyma.16G123400.2 PAC:30561791	High	No	755		Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -23.351 AMFE: -0.612 GC content %: 38.146
Gmax_Glyma.16G123400.3 Glyma.16G123400.3 PAC:30561789	High	No	981		Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -24.832 AMFE: -0.669 GC content %: 37.105
Gmax_Glyma.16G123400.4 Glyma.16G123400.4 PAC:30561790	High	No	773		Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -23.777 AMFE: -0.623 GC content %: 38.163

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).