Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Gmax_Glyma.16G164700 Glyma.16G164700 |
Chr16 | 32360777 | 32366670 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Gmax_Glyma.16G164700.1 Glyma.16G164700.1 PAC:30561184 |
Low | No | 881 | Get ORF Coding potential... Type: noncoding Potential: -0.512 Folding energies... MFEI: -24.484 AMFE: -0.636 GC content %: 38.479 | |
Gmax_Glyma.16G164700.2 Glyma.16G164700.2 PAC:30561186 |
Low | No | 678 | Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -23.732 AMFE: -0.654 GC content %: 36.283 | |
Gmax_Glyma.16G164700.3 Glyma.16G164700.3 PAC:30561185 |
Low | No | 2470 | Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -24.158 AMFE: -0.639 GC content %: 37.814 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmax_Glyma.16G164700.1 | SwissProt | 2015-06-01 | Q9C1W5 | 3.0e-12 |
Gmax_Glyma.16G164700.2 | SwissProt | 2015-06-01 | Q9C1W5 | 1.0e-12 |
Gmax_Glyma.16G164700.3 | SwissProt | 2015-06-01 | P10978 | 3.0e-11 |
Gmax_Glyma.16G164700.3 | RepBase (RepeatMasker) | 2014-01-31 | Copia-75_GM-I |