GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.17G057000 Glyma.17G057000	Chr17	4314446	4315959	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.17G057000.1 Glyma.17G057000.1 PAC:30479826	High	No	1085		Get ORF Coding potential... Type: noncoding Potential: -0.866 Folding energies... MFEI: -22.258 AMFE: -0.538 GC content %: 41.382
Gmax_Glyma.17G057000.2 Glyma.17G057000.2 PAC:30479825	High	No	862		Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -22.541 AMFE: -0.522 GC content %: 43.155

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).