GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.17G071000 Glyma.17G071000	Chr17	5560641	5561964	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.17G071000.1 Glyma.17G071000.1 PAC:30482123	High	No	537		Get ORF Coding potential... Type: noncoding Potential: -0.661 Folding energies... MFEI: -24.879 AMFE: -0.599 GC content %: 41.527
Gmax_Glyma.17G071000.2 Glyma.17G071000.2 PAC:30482124	High	No	344		Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -25.698 AMFE: -0.542 GC content %: 47.384

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).