GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.17G249800 Glyma.17G249800	Chr17	40484710	40486475	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.17G249800.1 Glyma.17G249800.1 PAC:30482535	High	No	575		Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -23.617 AMFE: -0.573 GC content %: 41.217
Gmax_Glyma.17G249800.2 Glyma.17G249800.2 PAC:30482537	High	No	678		Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -22.507 AMFE: -0.561 GC content %: 40.118
Gmax_Glyma.17G249800.3 Glyma.17G249800.3 PAC:30482536	High	No	609		Get ORF Coding potential... Type: noncoding Potential: -0.729 Folding energies... MFEI: -22.923 AMFE: -0.574 GC content %: 39.901

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).