Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Gmax_Glyma.18G135000 Glyma.18G135000 |
Chr18 | 19421552 | 19427958 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Gmax_Glyma.18G135000.1 Glyma.18G135000.1 PAC:30557307 |
High | No | 959 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -26.277 AMFE: -0.694 GC content %: 37.852 | |
Gmax_Glyma.18G135000.2 Glyma.18G135000.2 PAC:30557308 |
Low | No | 829 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -28.154 AMFE: -0.727 GC content %: 38.721 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmax_Glyma.18G135000.2 | RepBase (RepeatMasker) | 2014-01-31 | GmGYPSY10_LTR |