GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.18G164200 Glyma.18G164200	Chr18	38180336	38181588	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.18G164200.1 Glyma.18G164200.1 PAC:30557415	High	No	693		Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -27.734 AMFE: -0.670 GC content %: 41.414
Gmax_Glyma.18G164200.2 Glyma.18G164200.2 PAC:30557417	High	No	714		Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -25.588 AMFE: -0.639 GC content %: 40.056
Gmax_Glyma.18G164200.3 Glyma.18G164200.3 PAC:30557416	High	No	282		Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -28.298 AMFE: -0.609 GC content %: 46.454

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).