Gene
Gmax Glyma.18G270200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Gmax_Glyma.18G270200 Glyma.18G270200 |
Chr18 | 55391454 | 55397419 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Gmax_Glyma.18G270200.1 Glyma.18G270200.1 PAC:30557799 |
High | No | 1772 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -25.813 AMFE: -0.665 GC content %: 38.826 | |
| Gmax_Glyma.18G270200.2 Glyma.18G270200.2 PAC:30557800 |
High | No | 1286 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -25.031 AMFE: -0.646 GC content %: 38.725 | |
| Gmax_Glyma.18G270200.3 Glyma.18G270200.3 PAC:30557801 |
High | No | 1428 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -25.595 AMFE: -0.666 GC content %: 38.445 | |
| Gmax_Glyma.18G270200.4 Glyma.18G270200.4 PAC:30557798 |
High | No | 1434 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -25.488 AMFE: -0.662 GC content %: 38.494 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
