GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.18G299600 Glyma.18G299600	Chr18	57751224	57755761	Phytozome	Wm82.a2.v1	Glycine_max	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.18G299600.4 Glyma.18G299600.4 PAC:30556244	High	No	924		Get ORF Coding potential... Type: noncoding Potential: -0.549 Folding energies... MFEI: -24.286 AMFE: -0.622 GC content %: 39.069
Gmax_Glyma.18G299600.5 Glyma.18G299600.5 PAC:30556245	High	No	990		Get ORF Coding potential... Type: noncoding Potential: -0.468 Folding energies... MFEI: -22.374 AMFE: -0.595 GC content %: 37.576

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).