GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.19G010500 Glyma.19G010500	Chr19	1007683	1010723	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.19G010500.1 Glyma.19G010500.1 PAC:30512036	High	No	1220		Get ORF Coding potential... Type: noncoding Potential: -0.613 Folding energies... MFEI: -25.033 AMFE: -0.668 GC content %: 37.459
Gmax_Glyma.19G010500.2 Glyma.19G010500.2 PAC:30512037	High	No	1132		Get ORF Coding potential... Type: noncoding Potential: -0.497 Folding energies... MFEI: -25.521 AMFE: -0.660 GC content %: 38.693
Gmax_Glyma.19G010500.3 Glyma.19G010500.3 PAC:30512038	High	No	1054		Get ORF Coding potential... Type: noncoding Potential: -0.476 Folding energies... MFEI: -25.939 AMFE: -0.667 GC content %: 38.899

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).