Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Gmax_Glyma.20G134900 Glyma.20G134900 |
Chr20 | 37450450 | 37453380 | Phytozome | Wm82.a2.v1 | Glycine_max | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Gmax_Glyma.20G134900.1 Glyma.20G134900.1 PAC:30523132 |
Low | No | 1645 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -25.046 AMFE: -0.673 GC content %: 37.204 | |
Gmax_Glyma.20G134900.2 Glyma.20G134900.2 PAC:30523133 |
Low | No | 1633 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -25.168 AMFE: -0.677 GC content %: 37.171 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmax_Glyma.20G134900.2 | RepBase (RepeatMasker) | 2014-01-31 | L1-9_GM | |
Gmax_Glyma.20G134900.1 | RepBase (RepeatMasker) | 2014-01-31 | L1-9_GM |