GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Gmax_Glyma.U038100 Glyma.U038100	scaffold_44	41093	42518	Phytozome	Wm82.a2.v1	Glycine_max	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Gmax_Glyma.U038100.1 Glyma.U038100.1 PAC:30541472	High	No	1220		Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -21.500 AMFE: -0.604 GC content %: 35.574
Gmax_Glyma.U038100.2 Glyma.U038100.2 PAC:30541473	High	No	1124		Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -21.379 AMFE: -0.590 GC content %: 36.210

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).