GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.001G029500 Gorai.001G029500	Chr01	2753270	2758181	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.001G029500.1 Gorai.001G029500.1 PAC:26824130	High	No	751		Get ORF Coding potential... Type: noncoding Potential: -0.156 Folding energies... MFEI: -21.145 AMFE: -0.563 GC content %: 37.550
Graimondii_Gorai.001G029500.2 Gorai.001G029500.2 PAC:26824131	High	No	638		Get ORF Coding potential... Type: noncoding Potential: -0.111 Folding energies... MFEI: -21.348 AMFE: -0.560 GC content %: 38.088
Graimondii_Gorai.001G029500.3 Gorai.001G029500.3 PAC:26824129	High	No	633		Get ORF Coding potential... Type: noncoding Potential: -0.108 Folding energies... MFEI: -21.706 AMFE: -0.561 GC content %: 38.705

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).